PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA40G00372
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 327aa    MW: 37559.8 Da    PI: 7.8949
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA40G00372genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.25e-12186211126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 y   +C+++ +tG+C yGd+CkF H+
  AA40G00372 186 YQPDICKDYKETGYCGYGDSCKFLHD 211
                 67789********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-9184217IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009185213IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-8185212IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-10186211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-13186216IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.6E-13246309IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139206.2E-9261304No hitNo description
SuperFamilySSF578501.98E-13261305No hitNo description
PROSITE profilePS5008910.483262300IPR001841Zinc finger, RING-type
SMARTSM001841.3E-4262299IPR001841Zinc finger, RING-type
CDDcd001627.06E-9262303No hitNo description
PROSITE patternPS005180277286IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSFRYQKKYH KNDAVCTFFK KPTKAKNIRK RTLDTEEEDG DSKSETSILQ NLKKTSKPDS  60
KLFFSSGPSK SSTPNESSEK SVNFHYDSSK EIQVQNDSRA TATLETETDF SQDARAIRER  120
VLKKADQTLK GNKKPSDEKL YTGIHGYTDH KAGFRREQTI SSEKAGGSHG PLRASAHIRV  180
SARFDYQPDI CKDYKETGYC GYGDSCKFLH DRGDYKPGWQ IEKEWEEAEK VRKRNKAMGI  240
EDEDEENADS DEEDEDALPF ACFICREPFV DPVVTKCKHY FCEHCALKHH MKNKKCFVCN  300
QPTQGIFNTA HEIKKRTAEE RSKAQDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2csy_A6e-202583161472Zinc finger protein 183-like 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474729.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_010474731.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX840.0C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLR0GQF70.0R0GQF7_9BRAS; Uncharacterized protein
STRINGscaffold_100114.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.10.0C3H family protein